recipe bioconductor-appreci8r

appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/appreci8R.html

License:

LGPL-3

Recipe:

/bioconductor-appreci8r/meta.yaml

The appreci8R is an R version of our appreci8-algorithm - A Pipeline for PREcise variant Calling Integrating 8 tools. Variant calling results of our standard appreci8-tools (GATK, Platypus, VarScan, FreeBayes, LoFreq, SNVer, samtools and VarDict), as well as up to 5 additional tools is combined, evaluated and filtered.

package bioconductor-appreci8r

(downloads) docker_bioconductor-appreci8r

Versions:

1.16.0-01.12.0-01.10.0-01.8.0-11.6.0-01.4.0-11.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-appreci8r

and update with:

conda update bioconductor-appreci8r

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-appreci8r:<tag>

(see bioconductor-appreci8r/tags for valid values for <tag>)

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