-
recipe
bioconductor-artms
Analytical R tools for Mass Spectrometry
- Homepage
- License
GPL (>= 3) + file LICENSE
- Recipe
artMS provides a set of tools for the analysis of proteomics label-free datasets. It takes as input the MaxQuant search result output (evidence.txt file) and performs quality control, relative quantification using MSstats, downstream analysis and integration. artMS also provides a set of functions to re-format and make it compatible with other analytical tools, including, SAINTq, SAINTexpress, Phosfate, and PHOTON. Check [http://artms.org](http://artms.org) for details.
-
package
bioconductor-artms
¶ -
- Versions
1.8.0-0
,1.6.3-0
,1.4.0-0
,1.2.6-0
,1.0.10-0
,1.0.1-0
- Depends
bioconductor-annotationdbi
>=1.52.0,<1.53.0
bioconductor-biomart
>=2.46.0,<2.47.0
bioconductor-complexheatmap
>=2.6.0,<2.7.0
bioconductor-limma
>=3.46.0,<3.47.0
bioconductor-msstats
>=3.22.0,<3.23.0
bioconductor-org.hs.eg.db
>=3.12.0,<3.13.0
bioconductor-org.mm.eg.db
>=3.12.0,<3.13.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-artms
and update with:
conda update bioconductor-artms
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-artms:<tag>
(see bioconductor-artms/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-artms/README.html)