recipe bioconductor-ashkenazimsonchr21

Annotated variants on the chromosome 21, human genome 19, Ashkenazim Trio son sample

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/AshkenazimSonChr21.html

License:

Artistic-2.0

Recipe:

/bioconductor-ashkenazimsonchr21/meta.yaml

SonVariantsChr21 is a dataset of annotated genomic variants coming from Complete Genomics whole genome sequencing. Data comes from GIAB project, Ashkenazim Trio, sample HG002 run 1. Both vcf and annotated data frame are provided.

package bioconductor-ashkenazimsonchr21

(downloads) docker_bioconductor-ashkenazimsonchr21

versions:
1.32.0-0,  1.30.0-0,  1.28.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.19.0-0, 

1.32.0-0,  1.30.0-0,  1.28.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.19.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0

depends bioconductor-data-packages:

>=20231203

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-ashkenazimsonchr21

and update with::

   mamba update bioconductor-ashkenazimsonchr21

To create a new environment, run:

mamba create --name myenvname bioconductor-ashkenazimsonchr21

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-ashkenazimsonchr21:<tag>

(see `bioconductor-ashkenazimsonchr21/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ashkenazimsonchr21/README.html)