recipe bioconductor-asics

With a set of pure metabolite reference spectra, ASICS quantifies concentration of metabolites in a complex spectrum. The identification of metabolites is performed by fitting a mixture model to the spectra of the library with a sparse penalty. The method and its statistical properties are described in Tardivel et al. (2017) <doi:10.1007/s11306-017-1244-5>.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/ASICS.html

License

GPL (>= 2)

Recipe

/bioconductor-asics/meta.yaml

package bioconductor-asics

(downloads) docker_bioconductor-asics

Versions

1.2.0-0

Depends bioconductor-biocparallel

>=1.16.0,<1.17.0

Depends bioconductor-ropls

>=1.14.0,<1.15.0

Depends bioconductor-summarizedexperiment

>=1.12.0,<1.13.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-ggplot2

Depends r-gridextra

Depends r-plyr

Depends r-quadprog

Depends r-speaq

Depends r-zoo

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-asics

and update with:

conda update bioconductor-asics

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-asics:<tag>

(see bioconductor-asics/tags for valid values for <tag>)