recipe bioconductor-aspli

Analysis of Alternative Splicing Using RNA-Seq

Homepage

https://bioconductor.org/packages/3.13/bioc/html/ASpli.html

License

GPL

Recipe

/bioconductor-aspli/meta.yaml

Links

biotools: aspli, doi: 10.1038/nmeth.3252

Integrative pipeline for the analysis of alternative splicing using RNAseq.

package bioconductor-aspli

Versions

2.2.0-0,  2.0.0-1,  2.0.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0, 

2.2.0-0,  2.0.0-1,  2.0.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.3-0

Depends

• bioconductor-annotationdbi >=1.54.0,<1.55.0

• bioconductor-biocgenerics >=0.38.0,<0.39.0

• bioconductor-biocstyle >=2.20.0,<2.21.0

• bioconductor-edger >=3.34.0,<3.35.0

• bioconductor-genomicalignments >=1.28.0,<1.29.0

• bioconductor-genomicfeatures >=1.44.0,<1.45.0

• bioconductor-genomicranges >=1.44.0,<1.45.0

• bioconductor-gviz >=1.36.0,<1.37.0

• bioconductor-iranges >=2.26.0,<2.27.0

• bioconductor-limma >=3.48.0,<3.49.0

• bioconductor-rsamtools >=2.8.0,<2.9.0

• bioconductor-s4vectors >=0.30.0,<0.31.0

• r-base >=4.1,<4.2.0a0

• r-data.table

• r-dt

• r-htmltools

• r-igraph

• r-mass

• r-pbmcapply

• r-tidyr

• r-upsetr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-aspli

and update with:

conda update bioconductor-aspli

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-aspli:<tag>

(see bioconductor-aspli/tags for valid values for <tag>)

Download stats

Link to this page

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