recipe bioconductor-aspli

Analysis of Alternative Splicing Using RNA-Seq

Homepage

https://bioconductor.org/packages/3.14/bioc/html/ASpli.html

License

GPL

Recipe

/bioconductor-aspli/meta.yaml

Links

biotools: aspli, doi: 10.1038/nmeth.3252

Integrative pipeline for the analysis of alternative splicing using RNAseq.

package bioconductor-aspli

Versions

2.4.0-0,  2.2.0-0,  2.0.0-1,  2.0.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0,  1.6.0-0, 

2.4.0-0,  2.2.0-0,  2.0.0-1,  2.0.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.3-0

Depends

• bioconductor-annotationdbi >=1.56.0,<1.57.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biocstyle >=2.22.0,<2.23.0

• bioconductor-edger >=3.36.0,<3.37.0

• bioconductor-genomicalignments >=1.30.0,<1.31.0

• bioconductor-genomicfeatures >=1.46.0,<1.47.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-gviz >=1.38.0,<1.39.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-rsamtools >=2.10.0,<2.11.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• r-base >=4.1,<4.2.0a0

• r-data.table

• r-dt

• r-htmltools

• r-igraph

• r-mass

• r-pbmcapply

• r-tidyr

• r-upsetr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-aspli

and update with:

conda update bioconductor-aspli

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-aspli:<tag>

(see bioconductor-aspli/tags for valid values for <tag>)

Download stats

Link to this page

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