Package Recipe 'bioconductor-aspli'

recipe bioconductor-aspli¶

Integrative pipeline for the analysis of alternative splicing using RNAseq.

Homepage: https://bioconductor.org/packages/3.9/bioc/html/ASpli.html
License: GPL
Recipe: /bioconductor-aspli/meta.yaml
Links: biotools: aspli, doi: 10.1038/nmeth.3252

package bioconductor-aspli¶

Versions: 1.8.0-0, 1.6.0-0, 1.4.0-0, 1.2.3-0
Depends bioconductor-annotationdbi: >=1.44.0,<1.45.0
Depends bioconductor-biocgenerics: >=0.28.0,<0.29.0
Depends bioconductor-biocstyle: >=2.10.0,<2.11.0
Depends bioconductor-edger: >=3.24.0,<3.25.0
Depends bioconductor-genomicalignments: >=1.18.0,<1.19.0
Depends bioconductor-genomicfeatures: >=1.34.0,<1.35.0
Depends bioconductor-genomicranges: >=1.34.0,<1.35.0
Depends bioconductor-gviz: >=1.26.0,<1.27.0
Depends bioconductor-iranges: >=2.16.0,<2.17.0
Depends bioconductor-rsamtools: >=1.34.0,<1.35.0
Depends bioconductor-s4vectors: >=0.20.0,<0.21.0
Depends r-base: >=3.5.1,<3.5.2.0a0
Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-aspli

and update with:

conda update bioconductor-aspli

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-aspli:<tag>

(see bioconductor-aspli/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-aspli/README.html)