recipe bioconductor-aspli

Analysis of alternative splicing using RNA-Seq

Homepage

https://bioconductor.org/packages/3.10/bioc/html/ASpli.html

License

GPL

Recipe

/bioconductor-aspli/meta.yaml

Links

biotools: aspli, doi: 10.1038/nmeth.3252

Integrative pipeline for the analysis of alternative splicing using RNAseq.

package bioconductor-aspli

Versions

1.12.0-0, 1.10.0-1, 1.8.0-0, 1.6.0-0, 1.4.0-0, 1.2.3-0

Depends

• bioconductor-annotationdbi >=1.48.0,<1.49.0

• bioconductor-biocgenerics >=0.32.0,<0.33.0

• bioconductor-biocstyle >=2.14.0,<2.15.0

• bioconductor-edger >=3.28.0,<3.29.0

• bioconductor-genomicalignments >=1.22.0,<1.23.0

• bioconductor-genomicfeatures >=1.38.0,<1.39.0

• bioconductor-genomicranges >=1.38.0,<1.39.0

• bioconductor-gviz >=1.30.0,<1.31.0

• bioconductor-iranges >=2.20.0,<2.21.0

• bioconductor-rsamtools >=2.2.0,<2.3.0

• bioconductor-s4vectors >=0.24.0,<0.25.0

• r-base >=3.6,<3.7.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-aspli

and update with:

conda update bioconductor-aspli

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-aspli:<tag>

(see bioconductor-aspli/tags for valid values for <tag>)

Link to this page

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