- recipe bioconductor-aspli
Analysis of Alternative Splicing Using RNA-Seq
- Homepage
- License
GPL
- Recipe
- Links
biotools: aspli, doi: 10.1038/nmeth.3252
Integrative pipeline for the analysis of alternative splicing using RNAseq.
- package bioconductor-aspli¶
-
- Versions
2.4.0-0
,2.2.0-0
,2.0.0-1
,2.0.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.8.0-0
,1.6.0-0
,2.4.0-0
,2.2.0-0
,2.0.0-1
,2.0.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.2.3-0
- Depends
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biocstyle
>=2.22.0,<2.23.0
bioconductor-edger
>=3.36.0,<3.37.0
bioconductor-genomicalignments
>=1.30.0,<1.31.0
bioconductor-genomicfeatures
>=1.46.0,<1.47.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-gviz
>=1.38.0,<1.39.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-limma
>=3.50.0,<3.51.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-aspli
and update with:
conda update bioconductor-aspli
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-aspli:<tag>
(see bioconductor-aspli/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-aspli/README.html)