recipe bioconductor-aspli

Analysis of alternative splicing using RNA-Seq

Homepage

https://bioconductor.org/packages/3.11/bioc/html/ASpli.html

License

GPL

Recipe

/bioconductor-aspli/meta.yaml

Links

biotools: aspli, doi: 10.1038/nmeth.3252

Integrative pipeline for the analysis of alternative splicing using RNAseq.

package bioconductor-aspli

Versions

1.14.0-0, 1.12.0-0, 1.10.0-1, 1.8.0-0, 1.6.0-0, 1.4.0-0, 1.2.3-0

Depends

• bioconductor-annotationdbi >=1.50.0,<1.51.0

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-biocstyle >=2.16.0,<2.17.0

• bioconductor-edger >=3.30.0,<3.31.0

• bioconductor-genomicalignments >=1.24.0,<1.25.0

• bioconductor-genomicfeatures >=1.40.0,<1.41.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-gviz >=1.32.0,<1.33.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-rsamtools >=2.4.0,<2.5.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• r-base >=4.0,<4.1.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-aspli

and update with:

conda update bioconductor-aspli

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-aspli:<tag>

(see bioconductor-aspli/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-aspli/README.html)