- recipe bioconductor-aspli
Analysis of Alternative Splicing Using RNA-Seq
- Homepage:
- License:
GPL
- Recipe:
- Links:
biotools: aspli, doi: 10.1038/nmeth.3252
Integrative pipeline for the analysis of alternative splicing using RNAseq.
- package bioconductor-aspli¶
-
- Versions:
2.8.0-0
,2.4.0-0
,2.2.0-0
,2.0.0-1
,2.0.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.8.0-0
,2.8.0-0
,2.4.0-0
,2.2.0-0
,2.0.0-1
,2.0.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.2.3-0
- Depends:
bioconductor-annotationdbi
>=1.60.0,<1.61.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biocstyle
>=2.26.0,<2.27.0
bioconductor-edger
>=3.40.0,<3.41.0
bioconductor-genomicalignments
>=1.34.0,<1.35.0
bioconductor-genomicfeatures
>=1.50.0,<1.51.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-gviz
>=1.42.0,<1.43.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-limma
>=3.54.0,<3.55.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-aspli
and update with:
conda update bioconductor-aspli
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-aspli:<tag>
(see bioconductor-aspli/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-aspli/README.html)