recipe bioconductor-aspli

Analysis of Alternative Splicing Using RNA-Seq

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/ASpli.html

License:

GPL

Recipe:

/bioconductor-aspli/meta.yaml

Links:

biotools: aspli, doi: 10.1038/nmeth.3252

Integrative pipeline for the analysis of alternative splicing using RNAseq.

package bioconductor-aspli

Versions:

2.8.0-0,  2.4.0-0,  2.2.0-0,  2.0.0-1,  2.0.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0, 

2.8.0-0,  2.4.0-0,  2.2.0-0,  2.0.0-1,  2.0.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.3-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocstyle >=2.26.0,<2.27.0

• bioconductor-edger >=3.40.0,<3.41.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-gviz >=1.42.0,<1.43.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-dt

• r-htmltools

• r-igraph

• r-mass

• r-pbmcapply

• r-tidyr

• r-upsetr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-aspli

and update with:

conda update bioconductor-aspli

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-aspli:<tag>

(see bioconductor-aspli/tags for valid values for <tag>)

Download stats

Link to this page

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