recipe bioconductor-assessorf

Assess Gene Predictions Using Proteomics and Evolutionary Conservation

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/AssessORF.html

License:

GPL-3

Recipe:

/bioconductor-assessorf/meta.yaml

In order to assess the quality of a set of predicted genes for a genome, evidence must first be mapped to that genome. Next, each gene must be categorized based on how strong the evidence is for or against that gene. The AssessORF package provides the functions and class structures necessary for accomplishing those tasks, using proteomic hits and evolutionarily conserved start codons as the forms of evidence.

package bioconductor-assessorf

Versions:

1.16.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.0.2-0

Depends:

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-decipher >=2.26.0,<2.27.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-assessorf

and update with:

conda update bioconductor-assessorf

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-assessorf:<tag>

(see bioconductor-assessorf/tags for valid values for <tag>)

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Link to this page

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