- recipe bioconductor-assessorf
Assess Gene Predictions Using Proteomics and Evolutionary Conservation
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/AssessORF.html
- License:
GPL-3
- Recipe:
In order to assess the quality of a set of predicted genes for a genome, evidence must first be mapped to that genome. Next, each gene must be categorized based on how strong the evidence is for or against that gene. The AssessORF package provides the functions and class structures necessary for accomplishing those tasks, using proteomic hits and evolutionarily conserved start codons as the forms of evidence.
- package bioconductor-assessorf¶
-
- Versions:
1.16.0-0
,1.12.0-0
,1.10.0-0
,1.8.0-1
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.2.0-1
,1.0.2-0
- Depends:
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-decipher
>=2.26.0,<2.27.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-assessorf
and update with:
conda update bioconductor-assessorf
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-assessorf:<tag>
(see bioconductor-assessorf/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-assessorf/README.html)