bioconductor-bader

downloads

For RNA sequencing count data, BADER fits a Bayesian hierarchical model. The algorithm returns the posterior probability of differential expression for each gene between two groups A and B. The joint posterior distribution of the variables in the model can be returned in the form of posterior samples, which can be used for further down-stream analyses such as gene set enrichment.

Home http://bioconductor.org/packages/3.6/bioc/html/BADER.html
Versions 1.14.0, 1.16.0
License GPL-2
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-bader

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bader

and update with:

conda update bioconductor-bader

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-bader.