recipe bioconductor-bader

Bayesian Analysis of Differential Expression in RNA Sequencing Data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/BADER.html

License

GPL-2

Recipe

/bioconductor-bader/meta.yaml

Links

biotools: bader, doi: 10.1038/nmeth.3252

For RNA sequencing count data, BADER fits a Bayesian hierarchical model. The algorithm returns the posterior probability of differential expression for each gene between two groups A and B. The joint posterior distribution of the variables in the model can be returned in the form of posterior samples, which can be used for further down-stream analyses such as gene set enrichment.

package bioconductor-bader

(downloads) docker_bioconductor-bader

Versions

1.26.0-01.24.0-01.22.0-11.22.0-01.20.1-01.20.0-01.18.0-01.16.0-01.14.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bader

and update with:

conda update bioconductor-bader

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bader:<tag>

(see bioconductor-bader/tags for valid values for <tag>)