- recipe bioconductor-badregionfinder
BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/BadRegionFinder.html
- License:
LGPL-3
- Recipe:
- Links:
biotools: badregionfinder, doi: 10.1038/nmeth.3252
BadRegionFinder is a package for identifying regions with a bad, acceptable and good coverage in sequence alignment data available as bam files. The whole genome may be considered as well as a set of target regions. Various visual and textual types of output are available.
- package bioconductor-badregionfinder¶
-
- Versions:
1.26.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.10.0-0
,1.26.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-0
- Depends:
bioconductor-biomart
>=2.54.0,<2.55.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-variantannotation
>=1.44.0,<1.45.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-badregionfinder
and update with:
conda update bioconductor-badregionfinder
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-badregionfinder:<tag>
(see bioconductor-badregionfinder/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-badregionfinder/README.html)