recipe bioconductor-badregionfinder

BadRegionFinder is a package for identifying regions with a bad, acceptable and good coverage in sequence alignment data available as bam files. The whole genome may be considered as well as a set of target regions. Various visual and textual types of output are available.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/BadRegionFinder.html

License

LGPL-3

Recipe

/bioconductor-badregionfinder/meta.yaml

Links

biotools: badregionfinder, doi: 10.1038/nmeth.3252

package bioconductor-badregionfinder

(downloads) docker_bioconductor-badregionfinder

Versions

1.12.0-1, 1.10.0-0, 1.8.0-0, 1.6.0-0, 1.4.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-badregionfinder

and update with:

conda update bioconductor-badregionfinder

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-badregionfinder:<tag>

(see bioconductor-badregionfinder/tags for valid values for <tag>)