recipe bioconductor-badregionfinder

BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/BadRegionFinder.html

License:

LGPL-3

Recipe:

/bioconductor-badregionfinder/meta.yaml

Links:

biotools: badregionfinder, doi: 10.1038/nmeth.3252

BadRegionFinder is a package for identifying regions with a bad, acceptable and good coverage in sequence alignment data available as bam files. The whole genome may be considered as well as a set of target regions. Various visual and textual types of output are available.

package bioconductor-badregionfinder

(downloads) docker_bioconductor-badregionfinder

Versions:
1.22.0-01.20.0-01.18.0-11.18.0-01.16.0-01.14.0-01.12.0-11.10.0-01.8.0-0

1.22.0-01.20.0-01.18.0-11.18.0-01.16.0-01.14.0-01.12.0-11.10.0-01.8.0-01.6.0-01.4.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-badregionfinder

and update with:

conda update bioconductor-badregionfinder

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-badregionfinder:<tag>

(see bioconductor-badregionfinder/tags for valid values for <tag>)

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