recipe bioconductor-bambu

Reference-guided isoform reconstruction and quantification for long read RNA-Seq data

Homepage

https://bioconductor.org/packages/3.14/bioc/html/bambu.html

License

GPL-3 + file LICENSE

Recipe

/bioconductor-bambu/meta.yaml

bambu is a R package for multi-sample transcript discovery and quantification using long read RNA-Seq data. You can use bambu after read alignment to obtain expression estimates for known and novel transcripts and genes. The output from bambu can directly be used for visualisation and downstream analysis such as differential gene expression or transcript usage.

package bioconductor-bambu

(downloads) docker_bioconductor-bambu

Versions

2.0.0-01.2.0-01.0.2-11.0.2-01.0.0-2

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bambu

and update with:

conda update bioconductor-bambu

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bambu:<tag>

(see bioconductor-bambu/tags for valid values for <tag>)

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