bioconductor-banocc

downloads

BAnOCC is a package designed for compositional data, where each sample sums to one. It infers the approximate covariance of the unconstrained data using a Bayesian model coded with rstan. It provides as output the stanfit object as well as posterior median and credible interval estimates for each correlation element.

Home http://bioconductor.org/packages/3.6/bioc/html/banocc.html
Versions 1.0.0, 1.2.0
License MIT + file LICENSE
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-banocc

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-banocc

and update with:

conda update bioconductor-banocc

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-banocc.