bioconductor-basic4cseq

downloads

Basic4Cseq is an R/Bioconductor package for basic filtering, analysis and subsequent visualization of 4C-seq data. Virtual fragment libraries can be created for any BSGenome package, and filter functions for both reads and fragments and basic quality controls are included. Fragment data in the vicinity of the experiment’s viewpoint can be visualized as a coverage plot based on a running median approach and a multi-scale contact profile.

Home http://bioconductor.org/packages/3.6/bioc/html/Basic4Cseq.html
Versions 1.12.0, 1.14.0, 1.6.0
License LGPL-3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-basic4cseq

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-basic4cseq

and update with:

conda update bioconductor-basic4cseq

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-basic4cseq.