bioconductor-bhc

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The method performs bottom-up hierarchical clustering, using a Dirichlet Process (infinite mixture) to model uncertainty in the data and Bayesian model selection to decide at each step which clusters to merge. This avoids several limitations of traditional methods, for example how many clusters there should be and how to choose a principled distance metric. This implementation accepts multinomial (i.e. discrete, with 2+ categories) or time-series data. This version also includes a randomised algorithm which is more efficient for larger data sets.

Home http://bioconductor.org/packages/3.6/bioc/html/BHC.html
Versions 1.28.0, 1.30.0
License GPL-3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-bhc

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bhc

and update with:

conda update bioconductor-bhc

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-bhc.