recipe bioconductor-bioassayr

Cross-target analysis of small molecule bioactivity

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/bioassayR.html

License:

Artistic-2.0

Recipe:

/bioconductor-bioassayr/meta.yaml

bioassayR is a computational tool that enables simultaneous analysis of thousands of bioassay experiments performed over a diverse set of compounds and biological targets. Unique features include support for large-scale cross-target analyses of both public and custom bioassays, generation of high throughput screening fingerprints (HTSFPs), and an optional preloaded database that provides access to a substantial portion of publicly available bioactivity data.

package bioconductor-bioassayr

versions:

1.40.0-0,  1.38.0-0,  1.36.0-0,  1.32.0-0,  1.30.0-0,  1.28.2-0,  1.28.0-0,  1.26.0-0,  1.24.0-0, 

1.40.0-0,  1.38.0-0,  1.36.0-0,  1.32.0-0,  1.30.0-0,  1.28.2-0,  1.28.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.20.1-0,  1.20.0-0

depends bioconductor-biocgenerics:

>=0.48.0,<0.49.0

depends bioconductor-chemminer:

>=3.54.0,<3.55.0

depends r-base:

>=4.3,<4.4.0a0

depends r-dbi:

>=0.3.1

depends r-matrix:

depends r-rjson:

depends r-rsqlite:

>=1.0.0

depends r-xml:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-bioassayr

and update with::

   mamba update bioconductor-bioassayr

To create a new environment, run:

mamba create --name myenvname bioconductor-bioassayr

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-bioassayr:<tag>

(see `bioconductor-bioassayr/tags`_ for valid values for ``<tag>``)

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