recipe bioconductor-biocancer

Interactive Multi-Omics Cancers Data Visualization and Analysis

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/bioCancer.html

License:

AGPL-3 | file LICENSE

Recipe:

/bioconductor-biocancer/meta.yaml

This package is a Shiny App to visualize and analyse interactively Multi-Assays of Cancer Genomic Data.

package bioconductor-biocancer

versions:

1.34.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.22.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0, 

1.34.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.22.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0

depends bioconductor-annotationdbi:

>=1.68.0,<1.69.0

depends bioconductor-biobase:

>=2.66.0,<2.67.0

depends bioconductor-cbioportaldata:

>=2.18.0,<2.19.0

depends bioconductor-clusterprofiler:

>=4.14.0,<4.15.0

depends bioconductor-dose:

>=4.0.0,<4.1.0

depends bioconductor-genetclassifier:

>=1.46.0,<1.47.0

depends bioconductor-go.db:

>=3.20.0,<3.21.0

depends bioconductor-org.bt.eg.db:

>=3.20.0,<3.21.0

depends bioconductor-org.hs.eg.db:

>=3.20.0,<3.21.0

depends bioconductor-reactome.db:

>=1.89.0,<1.90.0

depends bioconductor-reactomepa:

>=1.50.0,<1.51.0

depends r-algdesign:

>=1.1.7.3

depends r-base:

>=4.4,<4.5.0a0

depends r-diagrammer:

<=1.01

depends r-dplyr:

>=0.7.2

depends r-dt:

>=0.3

depends r-htmlwidgets:

depends r-import:

>=1.1.0

depends r-plyr:

depends r-r.methodss3:

depends r-r.oo:

depends r-radiant.data:

>=0.9.1

depends r-shiny:

>=1.0.5

depends r-shinythemes:

depends r-tibble:

depends r-tidyr:

depends r-visnetwork:

depends r-xml:

>=3.98

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-biocancer

and update with::

   mamba update bioconductor-biocancer

To create a new environment, run:

mamba create --name myenvname bioconductor-biocancer

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-biocancer:<tag>

(see `bioconductor-biocancer/tags`_ for valid values for ``<tag>``)

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Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-biocancer/README.html)