recipe bioconductor-biocancer

bioCancer is a Shiny App to visualize and analyse interactively Multi-Assays of Cancer Genomic Data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/bioCancer.html

License

AGPL-3 | file LICENSE

Recipe

/bioconductor-biocancer/meta.yaml

package bioconductor-biocancer

(downloads) docker_bioconductor-biocancer

Versions

1.10.0-0

Depends bioconductor-annotationfuncs

>=1.32.0,<1.33.0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-clusterprofiler

>=3.10.0,<3.11.0

Depends bioconductor-dose

>=3.8.0,<3.9.0

Depends bioconductor-genetclassifier

>=1.22.0,<1.23.0

Depends bioconductor-org.hs.eg.db

>=3.7.0,<3.8.0

Depends bioconductor-reactome.db

>=1.66.0,<1.67.0

Depends bioconductor-reactomepa

>=1.26.0,<1.27.0

Depends r-algdesign

>=1.1.7.3

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-cgdsr

>=1.2.6

Depends r-diagrammer

>=0.7

Depends r-dplyr

>=0.7.2

Depends r-dt

>=0.3

Depends r-htmlwidgets

Depends r-import

>=1.1.0

Depends r-plyr

Depends r-radiant.data

>=0.9.1

Depends r-shiny

>=1.0.5

Depends r-shinythemes

Depends r-tibble

Depends r-visnetwork

Depends r-xml

>=3.98

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-biocancer

and update with:

conda update bioconductor-biocancer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-biocancer:<tag>

(see bioconductor-biocancer/tags for valid values for <tag>)