recipe bioconductor-biocartaimage

BioCarta Pathway Images

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/BioCartaImage.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-biocartaimage/meta.yaml

The core functionality of the package is to provide coordinates of genes on the BioCarta pathway images and to provide methods to add self-defined graphics to the genes of interest.

package bioconductor-biocartaimage

(downloads) docker_bioconductor-biocartaimage

versions:

1.4.0-0,  1.0.0-0

depends r-base:

>=4.4,<4.5.0a0

depends r-magick:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-biocartaimage

and update with::

   mamba update bioconductor-biocartaimage

To create a new environment, run:

mamba create --name myenvname bioconductor-biocartaimage

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-biocartaimage:<tag>

(see `bioconductor-biocartaimage/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-biocartaimage/README.html)