recipe bioconductor-biocbaseutils

General utility functions for developing Bioconductor packages






The package provides utility functions related to package development. These include functions that replace slots, and selectors for show methods. It aims to coalesce the various helper functions often re-used throughout the Bioconductor ecosystem.

package bioconductor-biocbaseutils

(downloads) docker_bioconductor-biocbaseutils



depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-biocbaseutils

and update with::

   mamba update bioconductor-biocbaseutils

To create a new environment, run:

mamba create --name myenvname bioconductor-biocbaseutils

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-biocbaseutils/tags`_ for valid values for ``<tag>``)

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