recipe bioconductor-biocdockermanager

Access Bioconductor docker images

Homepage:

https://bioconductor.org/packages/3.17/bioc/html/BiocDockerManager.html

License:

Artistic-2.0

Recipe:

/bioconductor-biocdockermanager/meta.yaml

Package works analogous to BiocManager but for docker images. Use the BiocDockerManager package to install and manage docker images provided by the Bioconductor project. A convenient package to install images, update images and find which Bioconductor based docker images are available.

package bioconductor-biocdockermanager

(downloads) docker_bioconductor-biocdockermanager

versions:

1.11.0-0,  1.10.0-0,  1.6.0-0,  1.4.0-0,  1.2.1-0,  1.2.0-0,  1.0.0-0

depends r-base:

>=4.3,<4.4.0a0

depends r-dplyr:

depends r-httr:

depends r-memoise:

depends r-readr:

depends r-whisker:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-biocdockermanager

and update with::

   mamba update bioconductor-biocdockermanager

To create a new environment, run:

mamba create --name myenvname bioconductor-biocdockermanager

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-biocdockermanager:<tag>

(see `bioconductor-biocdockermanager/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-biocdockermanager/README.html)