recipe bioconductor-biocfilecache

Manage Files Across Sessions

Homepage

https://bioconductor.org/packages/3.13/bioc/html/BiocFileCache.html

License

Artistic-2.0

Recipe

/bioconductor-biocfilecache/meta.yaml

This package creates a persistent on-disk cache of files that the user can add, update, and retrieve. It is useful for managing resources (such as custom Txdb objects) that are costly or difficult to create, web resources, and data files used across sessions.

package bioconductor-biocfilecache

Versions

2.0.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0, 

2.0.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.3-0

Depends

• r-base >=4.1,<4.2.0a0

• r-curl

• r-dbi

• r-dbplyr >=1.0.0

• r-dplyr

• r-filelock

• r-httr

• r-rappdirs

• r-rsqlite

Required By

• bioconductor-autonomics

• bioconductor-epitxdb

• bioconductor-tmexplorer

• bioconductor-experimenthub

• bioconductor-structtoolbox

• bioconductor-regutools

• bioconductor-genomicscores

• bioconductor-recount3

• bioconductor-gseabenchmarker

• bioconductor-biocpkgtools

• bioconductor-hca

• bioconductor-uniprot.ws

• bioconductor-ribodipa

• bioconductor-organism.dplyr

• bioconductor-umi4cats

• bioconductor-easyrnaseq

• bioconductor-hcabrowser

• bioconductor-hcamatrixbrowser

• bioconductor-psichomics

• bioconductor-ontoproc

• bioconductor-dasper

• bioconductor-amaretto

• bioconductor-mbqn

• bioconductor-singlecellmultimodal

• bioconductor-conclus

• bioconductor-biomart

• bioconductor-rcwlpipelines

• bioconductor-tximeta

• bioconductor-tfutils

• bioconductor-gwascat

• bioconductor-brainsaber

• bioconductor-uncoverapplib

• bioconductor-brendadb

• bioconductor-recountmethylation

• r-pipette

• bioconductor-enrichmentbrowser

• bioconductor-panther.db

• bioconductor-cellbench

• bioconductor-netdx

• bioconductor-gapgom

• bioconductor-genomicsupersignature

• bioconductor-hcaexplorer

• bioconductor-drugtargetinteractions

• bioconductor-ctdquerier

• bioconductor-customcmpdb

• bioconductor-spatialheatmap

• bioconductor-rpx

• bioconductor-fgga

• bioconductor-cbioportaldata

• bioconductor-annotationhub

• bioconductor-atsnp

• bioconductor-spatialexperiment

• bioconductor-waddr

• bioconductor-cbaf

• bioconductor-org.mxanthus.db

• bioconductor-spatiallibd

• bioconductor-bayesspace

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-biocfilecache

and update with:

conda update bioconductor-biocfilecache

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-biocfilecache:<tag>

(see bioconductor-biocfilecache/tags for valid values for <tag>)

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