- recipe bioconductor-biocneighbors
Nearest Neighbor Detection for Bioconductor Packages
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/BiocNeighbors.html
- License:
GPL-3
- Recipe:
Implements exact and approximate methods for nearest neighbor detection, in a framework that allows them to be easily switched within Bioconductor packages or workflows. Exact searches can be performed using the k-means for k-nearest neighbors algorithm or with vantage point trees. Approximate searches can be performed using the Annoy or HNSW libraries. Searching on either Euclidean or Manhattan distances is supported. Parallelization is achieved for all methods by using BiocParallel. Functions are also provided to search for all neighbors within a given distance.
- package bioconductor-biocneighbors¶
-
- Versions:
1.16.0-0
,1.12.0-2
,1.12.0-1
,1.12.0-0
,1.10.0-0
,1.8.2-0
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.16.0-0
,1.12.0-2
,1.12.0-1
,1.12.0-0
,1.10.0-0
,1.8.2-0
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.2.0-1
,1.0.0-0
- Depends:
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-biocneighbors
and update with:
conda update bioconductor-biocneighbors
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-biocneighbors:<tag>
(see bioconductor-biocneighbors/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-biocneighbors/README.html)