recipe bioconductor-biocset

Representing Different Biological Sets

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/BiocSet.html

License:

Artistic-2.0

Recipe:

/bioconductor-biocset/meta.yaml

BiocSet displays different biological sets in a triple tibble format. These three tibbles are `element`, `set`, and `elementset`. The user has the abilty to activate one of these three tibbles to perform common functions from the dplyr package. Mapping functionality and accessing web references for elements/sets are also available in BiocSet.

package bioconductor-biocset

Versions:

1.12.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-biocio >=1.8.0,<1.9.0

• bioconductor-keggrest >=1.38.0,<1.39.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-ontologyindex

• r-plyr

• r-rlang

• r-tibble

• r-tidyr

Required By:

• bioconductor-cbea

• bioconductor-regenrich

• bioconductor-sparrow

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-biocset

and update with:

conda update bioconductor-biocset

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-biocset:<tag>

(see bioconductor-biocset/tags for valid values for <tag>)

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