- recipe bioconductor-biodbchebi
biodbChebi, a library for connecting to the ChEBI Database
The biodbChebi library provides access to the ChEBI Database, using biodb package framework. It allows to retrieve entries by their accession number. Web services can be accessed for searching the database by name, mass or other fields.
- package bioconductor-biodbchebi¶
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install bioconductor-biodbchebi and update with:: mamba update bioconductor-biodbchebi
To create a new environment, run:
mamba create --name myenvname bioconductor-biodbchebi
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/bioconductor-biodbchebi:<tag> (see `bioconductor-biodbchebi/tags`_ for valid values for ``<tag>``)