recipe bioconductor-biodblipidmaps

biodbLipidmaps, a library for connecting to the Lipidmaps Structure database

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/biodbLipidmaps.html

License:

AGPL-3

Recipe:

/bioconductor-biodblipidmaps/meta.yaml

The biodbLipidmaps library provides access to the Lipidmaps Structure Database, using biodb package framework. It allows to retrieve entries by their accession number, and run web the services lmsdSearch and lmsdRecord.

package bioconductor-biodblipidmaps

versions:

1.8.0-0,  1.6.0-0,  1.3.0-0,  1.0.1-0

depends bioconductor-biodb:

>=1.10.0,<1.11.0

depends r-base:

>=4.3,<4.4.0a0

depends r-lifecycle:

depends r-r6:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-biodblipidmaps

and update with::

   mamba update bioconductor-biodblipidmaps

To create a new environment, run:

mamba create --name myenvname bioconductor-biodblipidmaps

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-biodblipidmaps:<tag>

(see `bioconductor-biodblipidmaps/tags`_ for valid values for ``<tag>``)

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Link to this page

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