recipe bioconductor-biodbncbi

biodbNcbi, a library for connecting to NCBI Databases.

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/biodbNcbi.html

License:

AGPL-3

Recipe:

/bioconductor-biodbncbi/meta.yaml

The biodbNcbi library provides access to the NCBI databases CCDS, Gene, Pubchem Comp and Pubchem Subst, using biodb package framework. It allows to retrieve entries by their accession number. Web services can be accessed for searching the database by name or mass.

package bioconductor-biodbncbi

(downloads) docker_bioconductor-biodbncbi

versions:

1.6.0-0,  1.4.0-0,  1.2.0-0

depends bioconductor-biodb:

>=1.10.0,<1.11.0

depends r-base:

>=4.3,<4.4.0a0

depends r-chk:

depends r-r6:

depends r-xml:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-biodbncbi

and update with::

   mamba update bioconductor-biodbncbi

To create a new environment, run:

mamba create --name myenvname bioconductor-biodbncbi

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-biodbncbi:<tag>

(see `bioconductor-biodbncbi/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-biodbncbi/README.html)