recipe bioconductor-biodbnci

biodbNci, a library for connecting to biodbNci, a library for connecting to the National Cancer Institute (USA) CACTUS Database






The biodbNci library is an extension of the biodb framework package. It provides access to biodbNci, a library for connecting to the National Cancer Institute (USA) CACTUS Database. It allows to retrieve entries by their accession number, and run specific web services.

package bioconductor-biodbnci

(downloads) docker_bioconductor-biodbnci



depends bioconductor-biodb:


depends bioconductor-biodb:


depends libblas:


depends libgcc-ng:


depends liblapack:


depends libstdcxx-ng:


depends r-base:


depends r-chk:

depends r-r6:

depends r-rcpp:

depends r-testthat:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-biodbnci

and update with::

   mamba update bioconductor-biodbnci

To create a new environment, run:

mamba create --name myenvname bioconductor-biodbnci

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-biodbnci/tags`_ for valid values for ``<tag>``)

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