recipe bioconductor-biomformat

An interface package for the BIOM file format

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/biomformat.html

License:

GPL-2

Recipe:

/bioconductor-biomformat/meta.yaml

Links:

biotools: biomformat, doi: 10.1038/nmeth.3252

This is an R package for interfacing with the BIOM format. This package includes basic tools for reading biom-format files, accessing and subsetting data tables from a biom object (which is more complex than a single table), as well as limited support for writing a biom-object back to a biom-format file. The design of this API is intended to match the python API and other tools included with the biom-format project, but with a decidedly "R flavor" that should be familiar to R users. This includes S4 classes and methods, as well as extensions of common core functions/methods.

package bioconductor-biomformat

Versions:

1.26.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0, 

1.26.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.1-0,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.2.0-0,  1.0.2-1,  1.0.2-0

Depends:

• bioconductor-rhdf5 >=2.42.0,<2.43.0

• r-base >=4.2,<4.3.0a0

• r-jsonlite >=0.9.16

• r-matrix >=1.2

• r-plyr >=1.8

Required By:

• r-ampvis2

• bioconductor-phyloseq

• bioconductor-microbiomemarker

• bioconductor-microbiomeexplorer

• bioconductor-animalcules

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-biomformat

and update with:

conda update bioconductor-biomformat

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-biomformat:<tag>

(see bioconductor-biomformat/tags for valid values for <tag>)

Download stats

Link to this page

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