recipe bioconductor-biomformat

An interface package for the BIOM file format

Homepage

https://bioconductor.org/packages/3.11/bioc/html/biomformat.html

License

GPL-2

Recipe

/bioconductor-biomformat/meta.yaml

Links

biotools: biomformat, doi: 10.1038/nmeth.3252

This is an R package for interfacing with the BIOM format. This package includes basic tools for reading biom-format files, accessing and subsetting data tables from a biom object (which is more complex than a single table), as well as limited support for writing a biom-object back to a biom-format file. The design of this API is intended to match the python API and other tools included with the biom-format project, but with a decidedly “R flavor” that should be familiar to R users. This includes S4 classes and methods, as well as extensions of common core functions/methods.

package bioconductor-biomformat

(downloads) docker_bioconductor-biomformat

Versions
1.16.0-01.14.0-01.12.0-11.12.0-01.10.1-01.10.0-01.8.0-01.6.0-01.4.0-0

1.16.0-01.14.0-01.12.0-11.12.0-01.10.1-01.10.0-01.8.0-01.6.0-01.4.0-01.2.0-11.2.0-01.0.2-11.0.2-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-biomformat

and update with:

conda update bioconductor-biomformat

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-biomformat:<tag>

(see bioconductor-biomformat/tags for valid values for <tag>)