- recipe bioconductor-biomformat
An interface package for the BIOM file format
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/biomformat.html
- License:
GPL-2
- Recipe:
- Links:
biotools: biomformat, doi: 10.1038/nmeth.3252
This is an R package for interfacing with the BIOM format. This package includes basic tools for reading biom-format files, accessing and subsetting data tables from a biom object (which is more complex than a single table), as well as limited support for writing a biom-object back to a biom-format file. The design of this API is intended to match the python API and other tools included with the biom-format project, but with a decidedly "R flavor" that should be familiar to R users. This includes S4 classes and methods, as well as extensions of common core functions/methods.
- package bioconductor-biomformat¶
-
- Versions:
1.26.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.12.0-0
,1.26.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.12.0-0
,1.10.1-0
,1.10.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.2.0-1
,1.2.0-0
,1.0.2-1
,1.0.2-0
- Depends:
bioconductor-rhdf5
>=2.42.0,<2.43.0
r-base
>=4.2,<4.3.0a0
r-jsonlite
>=0.9.16
r-matrix
>=1.2
r-plyr
>=1.8
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-biomformat
and update with:
conda update bioconductor-biomformat
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-biomformat:<tag>
(see bioconductor-biomformat/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-biomformat/README.html)