recipe bioconductor-bioplex

R-side access to BioPlex protein-protein interaction data

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/BioPlex.html

License:

Artistic-2.0

Recipe:

/bioconductor-bioplex/meta.yaml

The BioPlex package implements access to the BioPlex protein-protein interaction networks and related resources from within R. Besides protein-protein interaction networks for HEK293 and HCT116 cells, this includes access to CORUM protein complex data, and transcriptome and proteome data for the two cell lines. Functionality focuses on importing the various data resources and storing them in dedicated Bioconductor data structures, as a foundation for integrative downstream analysis of the data.

package bioconductor-bioplex

Versions:

1.4.0-0,  1.0.1-0

Depends:

• bioconductor-biocfilecache >=2.6.0,<2.7.0

• bioconductor-data-packages >=20221106

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-geoquery >=2.66.0,<2.67.0

• bioconductor-graph >=1.76.0,<1.77.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-bioplex

and update with:

conda update bioconductor-bioplex

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bioplex:<tag>

(see bioconductor-bioplex/tags for valid values for <tag>)

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Link to this page

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