- recipe bioconductor-bioplex
R-side access to BioPlex protein-protein interaction data
- Homepage:
https://bioconductor.org/packages/3.16/data/experiment/html/BioPlex.html
- License:
Artistic-2.0
- Recipe:
The BioPlex package implements access to the BioPlex protein-protein interaction networks and related resources from within R. Besides protein-protein interaction networks for HEK293 and HCT116 cells, this includes access to CORUM protein complex data, and transcriptome and proteome data for the two cell lines. Functionality focuses on importing the various data resources and storing them in dedicated Bioconductor data structures, as a foundation for integrative downstream analysis of the data.
- package bioconductor-bioplex¶
-
- Versions:
1.4.0-0
,1.0.1-0
- Depends:
bioconductor-biocfilecache
>=2.6.0,<2.7.0
bioconductor-data-packages
>=20221106
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-geoquery
>=2.66.0,<2.67.0
bioconductor-graph
>=1.76.0,<1.77.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-bioplex
and update with:
conda update bioconductor-bioplex
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-bioplex:<tag>
(see bioconductor-bioplex/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-bioplex/README.html)