recipe bioconductor-bioqc

Detect tissue heterogeneity in expression profiles with gene sets

Homepage

https://bioconductor.org/packages/3.11/bioc/html/BioQC.html

License

GPL (>=3)

Recipe

/bioconductor-bioqc/meta.yaml

Links

biotools: bioqc, doi: 10.1186/s12864-017-3661-2

BioQC performs quality control of high-throughput expression data based on tissue gene signatures. It can detect tissue heterogeneity in gene expression data. The core algorithm is a Wilcoxon-Mann-Whitney test that is optimised for high performance.

package bioconductor-bioqc

(downloads) docker_bioconductor-bioqc

Versions

1.16.0-0, 1.14.0-0, 1.12.0-1, 1.10.0-0, 1.8.0-0, 1.6.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bioqc

and update with:

conda update bioconductor-bioqc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bioqc:<tag>

(see bioconductor-bioqc/tags for valid values for <tag>)