Package Recipe 'bioconductor-biostrings'

recipe bioconductor-biostrings

Efficient manipulation of biological strings

Homepage: https://bioconductor.org/packages/3.13/bioc/html/Biostrings.html
License: Artistic-2.0
Recipe: /bioconductor-biostrings/meta.yaml
Links: biotools: biostrings, doi: 10.1038/nmeth.3252

Memory efficient string containers, string matching algorithms, and other utilities, for fast manipulation of large biological sequences or sets of sequences.

package bioconductor-biostrings¶

Versions

2.60.0-0, 2.58.0-1, 2.58.0-0, 2.56.0-0, 2.54.0-0, 2.52.0-1, 2.50.2-0, 2.50.1-0, 2.48.0-0,

2.60.0-0, 2.58.0-1, 2.58.0-0, 2.56.0-0, 2.54.0-0, 2.52.0-1, 2.50.2-0, 2.50.1-0, 2.48.0-0, 2.46.0-0, 2.44.2-0, 2.42.1-0, 2.40.2-0, 2.40.0-0, 2.38.4-0, 2.38.3-0, 2.38.2-0, 2.38.0-0

Depends

bioconductor-biocgenerics >=0.38.0,<0.39.0
bioconductor-genomeinfodb >=1.28.0,<1.29.0
bioconductor-iranges >=2.26.0,<2.27.0
bioconductor-s4vectors >=0.30.0,<0.31.0
bioconductor-xvector >=0.32.0,<0.33.0
libblas >=3.8.0,<4.0a0
libgcc-ng >=9.3.0
liblapack >=3.8.0,<4.0a0
r-base >=4.1,<4.2.0a0
r-crayon

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-biostrings

and update with:

conda update bioconductor-biostrings

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-biostrings:<tag>

(see bioconductor-biostrings/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-biostrings/README.html)