recipe bioconductor-biostrings

Efficient manipulation of biological strings

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/Biostrings.html

License:

Artistic-2.0

Recipe:

/bioconductor-biostrings/meta.yaml

Links:

biotools: biostrings, doi: 10.1038/nmeth.3252

Memory efficient string containers, string matching algorithms, and other utilities, for fast manipulation of large biological sequences or sets of sequences.

package bioconductor-biostrings

versions:

2.74.0-1,  2.74.0-0,  2.70.1-2,  2.70.1-1,  2.70.1-0,  2.68.1-0,  2.66.0-1,  2.66.0-0,  2.62.0-2, 

2.74.0-1,  2.74.0-0,  2.70.1-2,  2.70.1-1,  2.70.1-0,  2.68.1-0,  2.66.0-1,  2.66.0-0,  2.62.0-2,  2.62.0-1,  2.62.0-0,  2.60.0-0,  2.58.0-1,  2.58.0-0,  2.56.0-0,  2.54.0-0,  2.52.0-1,  2.50.2-0,  2.50.1-0,  2.48.0-0,  2.46.0-0,  2.44.2-0,  2.42.1-0,  2.40.2-0,  2.40.0-0,  2.38.4-0,  2.38.3-0,  2.38.2-0,  2.38.0-0

depends bioconductor-biocgenerics:

>=0.52.0,<0.53.0

depends bioconductor-biocgenerics:

>=0.52.0,<0.53.0a0

depends bioconductor-genomeinfodb:

>=1.42.0,<1.43.0

depends bioconductor-genomeinfodb:

>=1.42.0,<1.43.0a0

depends bioconductor-iranges:

>=2.40.0,<2.41.0

depends bioconductor-iranges:

>=2.40.0,<2.41.0a0

depends bioconductor-s4vectors:

>=0.44.0,<0.45.0

depends bioconductor-s4vectors:

>=0.44.0,<0.45.0a0

depends bioconductor-xvector:

>=0.46.0,<0.47.0

depends bioconductor-xvector:

>=0.46.0,<0.47.0a0

depends libblas:

>=3.9.0,<4.0a0

depends libgcc:

>=13

depends liblapack:

>=3.9.0,<4.0a0

depends r-base:

>=4.4,<4.5.0a0

depends r-crayon:

requirements:

additional platforms:

linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-biostrings

and update with::

   mamba update bioconductor-biostrings

To create a new environment, run:

mamba create --name myenvname bioconductor-biostrings

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-biostrings:<tag>

(see `bioconductor-biostrings/tags`_ for valid values for ``<tag>``)

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