- recipe bioconductor-biovizbase
Basic graphic utilities for visualization of genomic data.
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/biovizBase.html
- License:
Artistic-2.0
- Recipe:
- Links:
biotools: biovizbase, doi: 10.1038/nmeth.3252
The biovizBase package is designed to provide a set of utilities, color schemes and conventions for genomic data. It serves as the base for various high-level packages for biological data visualization. This saves development effort and encourages consistency.
- package bioconductor-biovizbase¶
-
- Versions:
1.42.0-1
,1.42.0-0
,1.40.0-0
,1.38.0-1
,1.38.0-0
,1.36.0-0
,1.34.0-0
,1.32.0-1
,1.30.1-0
,1.42.0-1
,1.42.0-0
,1.40.0-0
,1.38.0-1
,1.38.0-0
,1.36.0-0
,1.34.0-0
,1.32.0-1
,1.30.1-0
,1.30.0-0
,1.28.2-0
,1.26.0-0
,1.24.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
- Depends:
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-annotationfilter
>=1.18.0,<1.19.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-ensembldb
>=2.18.0,<2.19.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicalignments
>=1.30.0,<1.31.0
bioconductor-genomicfeatures
>=1.46.0,<1.47.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
bioconductor-variantannotation
>=1.40.0,<1.41.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-biovizbase
and update with:
conda update bioconductor-biovizbase
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-biovizbase:<tag>
(see bioconductor-biovizbase/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-biovizbase/README.html)