recipe bioconductor-biovizbase

The biovizBase package is designed to provide a set of utilities, color schemes and conventions for genomic data. It serves as the base for various high-level packages for biological data visualization. This saves development effort and encourages consistency.

Homepage:https://bioconductor.org/packages/3.8/bioc/html/biovizBase.html License:Artistic-2.0 Recipe:/bioconductor-biovizbase/meta.yaml Links:biotools: biovizbase, doi: 10.1038/nmeth.3252

package bioconductor-biovizbase

Versions:

1.30.1-0, 1.30.0-0, 1.28.2-0, 1.26.0-0, 1.24.0-0, 1.20.0-0, 1.18.0-1, 1.18.0-0

Depends:

• bioconductor-annotationdbi >=1.44.0,<1.45.0
• bioconductor-annotationfilter >=1.6.0,<1.7.0
• bioconductor-biocgenerics >=0.28.0,<0.29.0
• bioconductor-biostrings >=2.50.0,<2.51.0
• bioconductor-ensembldb >=2.6.0,<2.7.0
• bioconductor-genomeinfodb >=1.18.0,<1.19.0
• bioconductor-genomicalignments >=1.18.0,<1.19.0
• bioconductor-genomicfeatures >=1.34.0,<1.35.0
• bioconductor-genomicranges >=1.34.0,<1.35.0
• bioconductor-iranges >=2.16.0,<2.17.0
• bioconductor-rsamtools >=1.34.0,<1.35.0
• bioconductor-s4vectors >=0.20.0,<0.21.0
• bioconductor-summarizedexperiment >=1.12.0,<1.13.0
• bioconductor-variantannotation >=1.28.0,<1.29.0
• libgcc-ng >=7.3.0
• r-base >=3.5.1,<3.5.2.0a0
• r-dichromat
• r-hmisc
• r-rcolorbrewer
• r-rlang
• r-scales

Required By:

• bioconductor-karyoploter
• bioconductor-cafe
• bioconductor-rqc
• bioconductor-bubbletree
• bioconductor-chipexoqual
• bioconductor-pviz
• bioconductor-ggbio
• bioconductor-gviz
• bioconductor-qrqc

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-biovizbase

and update with:

conda update bioconductor-biovizbase

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-biovizbase:<tag>

(see bioconductor-biovizbase/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-biovizbase/README.html)