recipe bioconductor-biscuiteer

Convenience Functions for Biscuit

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/biscuiteer.html

License:

GPL-3

Recipe:

/bioconductor-biscuiteer/meta.yaml

A test harness for bsseq loading of Biscuit output, summarization of WGBS data over defined regions and in mappable samples, with or without imputation, dropping of mostly-NA rows, age estimates, etc.

package bioconductor-biscuiteer

Versions:

1.12.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-1

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-biscuiteerdata >=1.12.0,<1.13.0

• bioconductor-bsseq >=1.34.0,<1.35.0

• bioconductor-delayedmatrixstats >=1.20.0,<1.21.0

• bioconductor-dmrseq >=1.18.0,<1.19.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-hdf5array >=1.26.0,<1.27.0

• bioconductor-homo.sapiens >=1.3.0,<1.4.0

• bioconductor-impute >=1.72.0,<1.73.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-mus.musculus >=1.3.0,<1.4.0

• bioconductor-qdnaseq >=1.34.0,<1.35.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-variantannotation >=1.44.0,<1.45.0

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-gtools

• r-matrix

• r-matrixstats

• r-qualv

• r-r.utils

• r-readr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-biscuiteer

and update with:

conda update bioconductor-biscuiteer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-biscuiteer:<tag>

(see bioconductor-biscuiteer/tags for valid values for <tag>)

Download stats

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