Package Recipe 'bioconductor-biscuiteer'

recipe bioconductor-biscuiteer

Convenience Functions for Biscuit

Homepage: https://bioconductor.org/packages/3.13/bioc/html/biscuiteer.html
License: GPL-3
Recipe: /bioconductor-biscuiteer/meta.yaml

A test harness for bsseq loading of Biscuit output, summarization of WGBS data over defined regions and in mappable samples, with or without imputation, dropping of mostly-NA rows, age estimates, etc.

package bioconductor-biscuiteer¶

Versions

1.6.0-0, 1.4.0-1, 1.4.0-0, 1.2.0-0, 1.0.0-1

Depends

bioconductor-biobase >=2.52.0,<2.53.0
bioconductor-biocgenerics >=0.38.0,<0.39.0
bioconductor-biocparallel >=1.26.0,<1.27.0
bioconductor-biscuiteerdata >=1.6.0,<1.7.0
bioconductor-bsseq >=1.28.0,<1.29.0
bioconductor-delayedmatrixstats >=1.14.0,<1.15.0
bioconductor-dmrseq >=1.12.0,<1.13.0
bioconductor-genomeinfodb >=1.28.0,<1.29.0
bioconductor-genomicranges >=1.44.0,<1.45.0
bioconductor-hdf5array >=1.20.0,<1.21.0
bioconductor-homo.sapiens >=1.3.0,<1.4.0
bioconductor-impute >=1.66.0,<1.67.0
bioconductor-mus.musculus >=1.3.0,<1.4.0
bioconductor-qdnaseq >=1.28.0,<1.29.0
bioconductor-rsamtools >=2.8.0,<2.9.0
bioconductor-rtracklayer >=1.52.0,<1.53.0
bioconductor-s4vectors >=0.30.0,<0.31.0
bioconductor-summarizedexperiment >=1.22.0,<1.23.0
bioconductor-variantannotation >=1.38.0,<1.39.0
r-base >=4.1,<4.2.0a0
r-data.table
r-gtools
r-matrix
r-matrixstats
r-qualv
r-r.utils
r-readr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-biscuiteer

and update with:

conda update bioconductor-biscuiteer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-biscuiteer:<tag>

(see bioconductor-biscuiteer/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-biscuiteer/README.html)