- recipe bioconductor-biscuiteer
Convenience Functions for Biscuit
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/biscuiteer.html
- License
GPL-3
- Recipe
A test harness for bsseq loading of Biscuit output, summarization of WGBS data over defined regions and in mappable samples, with or without imputation, dropping of mostly-NA rows, age estimates, etc.
- package bioconductor-biscuiteer¶
-
- Versions
1.8.0-0
,1.6.0-0
,1.4.0-1
,1.4.0-0
,1.2.0-0
,1.0.0-1
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-biscuiteerdata
>=1.8.0,<1.9.0
bioconductor-bsseq
>=1.30.0,<1.31.0
bioconductor-delayedmatrixstats
>=1.16.0,<1.17.0
bioconductor-dmrseq
>=1.14.0,<1.15.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-hdf5array
>=1.22.0,<1.23.0
bioconductor-homo.sapiens
>=1.3.0,<1.4.0
bioconductor-impute
>=1.68.0,<1.69.0
bioconductor-mus.musculus
>=1.3.0,<1.4.0
bioconductor-qdnaseq
>=1.30.0,<1.31.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-rtracklayer
>=1.54.0,<1.55.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
bioconductor-variantannotation
>=1.40.0,<1.41.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-biscuiteer
and update with:
conda update bioconductor-biscuiteer
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-biscuiteer:<tag>
(see bioconductor-biscuiteer/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-biscuiteer/README.html)