bioconductor-biseq

downloads

The BiSeq package provides useful classes and functions to handle and analyze targeted bisulfite sequencing (BS) data such as reduced-representation bisulfite sequencing (RRBS) data. In particular, it implements an algorithm to detect differentially methylated regions (DMRs). The package takes already aligned BS data from one or multiple samples.

Home http://bioconductor.org/packages/3.6/bioc/html/BiSeq.html
Versions 1.16.0, 1.18.0
License LGPL-3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-biseq

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-biseq

and update with:

conda update bioconductor-biseq

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-biseq.