recipe bioconductor-bloodgen3module

This R package for performing module repertoire analyses and generating fingerprint representations






The BloodGen3Module package provides functions for R user performing module repertoire analyses and generating fingerprint representations. Functions can perform group comparison or individual sample analysis and visualization by fingerprint grid plot or fingerprint heatmap. Module repertoire analyses typically involve determining the percentage of the constitutive genes for each module that are significantly increased or decreased. As we describe in details; and, the results of module repertoire analyses can be represented in a fingerprint format, where red and blue spots indicate increases or decreases in module activity. These spots are subsequently represented either on a grid, with each position being assigned to a given module, or in a heatmap where the samples are arranged in columns and the modules in rows.

package bioconductor-bloodgen3module

(downloads) docker_bioconductor-bloodgen3module



Required By


With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bloodgen3module

and update with:

conda update bioconductor-bloodgen3module

or use the docker container:

docker pull<tag>

(see bioconductor-bloodgen3module/tags for valid values for <tag>)

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