- recipe bioconductor-bnbc
Bandwise normalization and batch correction of Hi-C data
- Homepage:
- License:
Artistic-2.0
- Recipe:
Tools to normalize (several) Hi-C data from replicates.
- package bioconductor-bnbc¶
-
- Versions:
1.20.0-0
,1.16.0-2
,1.16.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.12.0-0
,1.10.0-0
,1.8.0-0
,1.20.0-0
,1.16.0-2
,1.16.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.12.0-0
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.4.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-ebimage
>=4.40.0,<4.41.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-preprocesscore
>=1.60.0,<1.61.0
bioconductor-rhdf5
>=2.42.0,<2.43.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
bioconductor-sva
>=3.46.0,<3.47.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
r-rcpp
>=0.12.12
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-bnbc
and update with:
conda update bioconductor-bnbc
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-bnbc:<tag>
(see bioconductor-bnbc/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-bnbc/README.html)