recipe bioconductor-bnbc

Bandwise normalization and batch correction of Hi-C data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/bnbc.html

License:

Artistic-2.0

Recipe:

/bioconductor-bnbc/meta.yaml

Tools to normalize (several) Hi-C data from replicates.

package bioconductor-bnbc

Versions:

1.20.0-0,  1.16.0-2,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0, 

1.20.0-0,  1.16.0-2,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-ebimage >=4.40.0,<4.41.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-preprocesscore >=1.60.0,<1.61.0

• bioconductor-rhdf5 >=2.42.0,<2.43.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-sva >=3.46.0,<3.47.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-matrixstats

• r-rcpp >=0.12.12

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-bnbc

and update with:

conda update bioconductor-bnbc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bnbc:<tag>

(see bioconductor-bnbc/tags for valid values for <tag>)

Download stats

Link to this page

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