recipe bioconductor-bprmeth

Model higher-order methylation profiles

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/BPRMeth.html

License:

GPL-3 | file LICENSE

Recipe:

/bioconductor-bprmeth/meta.yaml

The BPRMeth package is a probabilistic method to quantify explicit features of methylation profiles, in a way that would make it easier to formally use such profiles in downstream modelling efforts, such as predicting gene expression levels or clustering genomic regions or cells according to their methylation profiles.

package bioconductor-bprmeth

Versions:

1.24.0-0,  1.20.0-2,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0, 

1.24.0-0,  1.20.0-2,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.1-0

Depends:

• bioconductor-biocstyle >=2.26.0,<2.27.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-assertthat

• r-base >=4.2,<4.3.0a0

• r-cowplot

• r-data.table

• r-doparallel

• r-e1071

• r-earth

• r-foreach

• r-ggplot2

• r-kernlab

• r-magrittr

• r-mass

• r-matrixcalc

• r-mvtnorm

• r-randomforest

• r-rcpp >=0.12.14

• r-rcpparmadillo

• r-truncnorm

Required By:

• bioconductor-melissa

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-bprmeth

and update with:

conda update bioconductor-bprmeth

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bprmeth:<tag>

(see bioconductor-bprmeth/tags for valid values for <tag>)

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