- recipe bioconductor-branchpointer
Prediction of intronic splicing branchpoints
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/branchpointer.html
- License:
BSD_3_clause + file LICENSE
- Recipe:
Predicts branchpoint probability for sites in intronic branchpoint windows. Queries can be supplied as intronic regions; or to evaluate the effects of mutations, SNPs.
- package bioconductor-branchpointer¶
-
- Versions:
1.20.0-0
,1.18.0-0
,1.16.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.8.0-0
- Depends:
bioconductor-biomart
>=2.50.0,<2.51.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-bsgenome.hsapiens.ucsc.hg38
>=1.4.0,<1.5.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-rtracklayer
>=1.54.0,<1.55.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-branchpointer
and update with:
conda update bioconductor-branchpointer
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-branchpointer:<tag>
(see bioconductor-branchpointer/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-branchpointer/README.html)