recipe bioconductor-branchpointer

Prediction of intronic splicing branchpoints

Homepage

https://bioconductor.org/packages/3.11/bioc/html/branchpointer.html

License

BSD_3_clause + file LICENSE

Recipe

/bioconductor-branchpointer/meta.yaml

Predicts branchpoint probability for sites in intronic branchpoint windows. Queries can be supplied as intronic regions; or to evaluate the effects of mutations, SNPs.

package bioconductor-branchpointer

Versions

1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0

Depends

• bioconductor-biomart >=2.44.0,<2.45.0

• bioconductor-biostrings >=2.56.0,<2.57.0

• bioconductor-bsgenome.hsapiens.ucsc.hg38 >=1.4.0,<1.5.0

• bioconductor-genomeinfodb >=1.24.0,<1.25.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-rtracklayer >=1.48.0,<1.49.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• r-base >=4.0,<4.1.0a0

• r-caret

• r-cowplot

• r-data.table

• r-gbm

• r-ggplot2

• r-kernlab

• r-plyr

• r-stringr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-branchpointer

and update with:

conda update bioconductor-branchpointer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-branchpointer:<tag>

(see bioconductor-branchpointer/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-branchpointer/README.html)