recipe bioconductor-breastcancertransbig

Gene expression dataset published by Desmedt et al. [2007] (TRANSBIG).

Homepage:

https://bioconductor.org/packages/3.17/data/experiment/html/breastCancerTRANSBIG.html

License:

Artistic-2.0

Recipe:

/bioconductor-breastcancertransbig/meta.yaml

Gene expression data from a breast cancer study published by Desmedt et al. in 2007, provided as an eSet.

package bioconductor-breastcancertransbig

(downloads) docker_bioconductor-breastcancertransbig

versions:
1.38.0-0,  1.35.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.27.0-0,  1.26.0-0, 

1.38.0-0,  1.35.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.27.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0

depends bioconductor-data-packages:

>=20230706

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-breastcancertransbig

and update with::

   mamba update bioconductor-breastcancertransbig

To create a new environment, run:

mamba create --name myenvname bioconductor-breastcancertransbig

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-breastcancertransbig:<tag>

(see `bioconductor-breastcancertransbig/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-breastcancertransbig/README.html)