recipe bioconductor-breastcancervdx

Gene expression datasets published by Wang et al. [2005] and Minn et al. [2007] (VDX).

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/breastCancerVDX.html

License:

Artistic-2.0

Recipe:

/bioconductor-breastcancervdx/meta.yaml

Gene expression data from a breast cancer study published by Wang et al. in 2005 and Minn et al. in 2007, provided as an eSet.

package bioconductor-breastcancervdx

(downloads) docker_bioconductor-breastcancervdx

versions:
1.44.0-0,  1.40.0-0,  1.38.0-0,  1.36.0-0,  1.35.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-3, 

1.44.0-0,  1.40.0-0,  1.38.0-0,  1.36.0-0,  1.35.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-3,  1.28.0-2,  1.28.0-1,  1.28.0-0,  1.27.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0

depends bioconductor-data-packages:

>=20241103

depends curl:

depends r-base:

>=4.4,<4.5.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-breastcancervdx

and update with::

   mamba update bioconductor-breastcancervdx

To create a new environment, run:

mamba create --name myenvname bioconductor-breastcancervdx

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-breastcancervdx:<tag>

(see `bioconductor-breastcancervdx/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-breastcancervdx/README.html)