recipe bioconductor-bsgenome.amellifera.ncbi.amelhav3.1

Full genome sequences for Apis mellifera (Amel_HAv3.1)

Homepage:

https://bioconductor.org/packages/3.20/data/annotation/html/BSgenome.Amellifera.NCBI.AmelHAv3.1.html

License:

Artistic-2.0

Recipe:

/bioconductor-bsgenome.amellifera.ncbi.amelhav3.1/meta.yaml

Full genome sequences for Apis mellifera as provided by NCBI (assembly Amel_HAv3.1, assembly accession GCF_003254395.2) and stored in Biostrings objects.

package bioconductor-bsgenome.amellifera.ncbi.amelhav3.1

versions:

1.5.0-6,  1.5.0-5,  1.5.0-4,  1.5.0-3,  1.5.0-2,  1.5.0-1,  1.5.0-0

depends bioconductor-bsgenome:

>=1.74.0,<1.75.0

depends bioconductor-data-packages:

>=20241103

depends curl:

depends r-base:

>=4.4,<4.5.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-bsgenome.amellifera.ncbi.amelhav3.1

and update with::

   mamba update bioconductor-bsgenome.amellifera.ncbi.amelhav3.1

To create a new environment, run:

mamba create --name myenvname bioconductor-bsgenome.amellifera.ncbi.amelhav3.1

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-bsgenome.amellifera.ncbi.amelhav3.1:<tag>

(see `bioconductor-bsgenome.amellifera.ncbi.amelhav3.1/tags`_ for valid values for ``<tag>``)

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