recipe bioconductor-bsgenome.athaliana.tair.tair9

Full genome sequences for Arabidopsis thaliana (TAIR9)






Full genome sequences for Arabidopsis thaliana as provided by TAIR (TAIR9 Genome Release) and stored in Biostrings objects. Note that TAIR10 is an "annotation release" based on the same genome assembly as TAIR9.

package bioconductor-bsgenome.athaliana.tair.tair9

(downloads) docker_bioconductor-bsgenome.athaliana.tair.tair9



depends bioconductor-bsgenome:


depends bioconductor-data-packages:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-bsgenome.athaliana.tair.tair9

and update with::

   mamba update bioconductor-bsgenome.athaliana.tair.tair9

To create a new environment, run:

mamba create --name myenvname bioconductor-bsgenome.athaliana.tair.tair9

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-bsgenome.athaliana.tair.tair9/tags`_ for valid values for ``<tag>``)

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