recipe bioconductor-bsgenome.cfamiliaris.ucsc.canfam2

Full genome sequences for Canis lupus familiaris (UCSC version canFam2)

Homepage:

https://bioconductor.org/packages/3.16/data/annotation/html/BSgenome.Cfamiliaris.UCSC.canFam2.html

License:

Artistic-2.0

Recipe:

/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2/meta.yaml

Full genome sequences for Canis lupus familiaris (Dog) as provided by UCSC (canFam2, May 2005) and stored in Biostrings objects.

package bioconductor-bsgenome.cfamiliaris.ucsc.canfam2

Versions:

1.4.0-10,  1.4.0-9,  1.4.0-8,  1.4.0-7,  1.4.0-6,  1.4.0-5,  1.4.0-4,  1.4.0-3,  1.4.0-2, 

1.4.0-10,  1.4.0-9,  1.4.0-8,  1.4.0-7,  1.4.0-6,  1.4.0-5,  1.4.0-4,  1.4.0-3,  1.4.0-2,  1.4.0-0

Depends:

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-data-packages >=20221102

• curl

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-bsgenome.cfamiliaris.ucsc.canfam2

and update with:

conda update bioconductor-bsgenome.cfamiliaris.ucsc.canfam2

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2:<tag>

(see bioconductor-bsgenome.cfamiliaris.ucsc.canfam2/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2/README.html)