recipe bioconductor-bsgenome.cfamiliaris.ucsc.canfam2

Full genome sequences for Canis lupus familiaris (UCSC version canFam2)

Homepage:

https://bioconductor.org/packages/3.18/data/annotation/html/BSgenome.Cfamiliaris.UCSC.canFam2.html

License:

Artistic-2.0

Recipe:

/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2/meta.yaml

Full genome sequences for Canis lupus familiaris (Dog) as provided by UCSC (canFam2, May 2005) and stored in Biostrings objects.

package bioconductor-bsgenome.cfamiliaris.ucsc.canfam2

(downloads) docker_bioconductor-bsgenome.cfamiliaris.ucsc.canfam2

versions:
1.4.0-12,  1.4.0-11,  1.4.0-10,  1.4.0-9,  1.4.0-8,  1.4.0-7,  1.4.0-6,  1.4.0-5,  1.4.0-4, 

1.4.0-12,  1.4.0-11,  1.4.0-10,  1.4.0-9,  1.4.0-8,  1.4.0-7,  1.4.0-6,  1.4.0-5,  1.4.0-4,  1.4.0-3,  1.4.0-2,  1.4.0-0

depends bioconductor-bsgenome:

>=1.70.0,<1.71.0

depends bioconductor-data-packages:

>=20231203

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-bsgenome.cfamiliaris.ucsc.canfam2

and update with::

   mamba update bioconductor-bsgenome.cfamiliaris.ucsc.canfam2

To create a new environment, run:

mamba create --name myenvname bioconductor-bsgenome.cfamiliaris.ucsc.canfam2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-bsgenome.cfamiliaris.ucsc.canfam2:<tag>

(see `bioconductor-bsgenome.cfamiliaris.ucsc.canfam2/tags`_ for valid values for ``<tag>``)

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