recipe bioconductor-bsgenome.cjacchus.ucsc.caljac4

Full genome sequences for Callithrix jacchus (UCSC version calJac4)

Homepage:

https://bioconductor.org/packages/3.18/data/annotation/html/BSgenome.Cjacchus.UCSC.calJac4.html

License:

Artistic-2.0

Recipe:

/bioconductor-bsgenome.cjacchus.ucsc.caljac4/meta.yaml

Full genome sequences for Callithrix jacchus (Marmoset) as provided by UCSC (calJac4, May 2020) and wrapped in a BSgenome object.

package bioconductor-bsgenome.cjacchus.ucsc.caljac4

(downloads) docker_bioconductor-bsgenome.cjacchus.ucsc.caljac4

versions:

1.5.0-2,  1.5.0-1,  1.5.0-0

depends bioconductor-bsgenome:

>=1.70.0,<1.71.0

depends bioconductor-data-packages:

>=20231202

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-bsgenome.cjacchus.ucsc.caljac4

and update with::

   mamba update bioconductor-bsgenome.cjacchus.ucsc.caljac4

To create a new environment, run:

mamba create --name myenvname bioconductor-bsgenome.cjacchus.ucsc.caljac4

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-bsgenome.cjacchus.ucsc.caljac4:<tag>

(see `bioconductor-bsgenome.cjacchus.ucsc.caljac4/tags`_ for valid values for ``<tag>``)

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