recipe bioconductor-bsgenome.gmax.ncbi.gmv40

Full genome sequences for Glycine max (Gmv40)



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Full genome sequences for Glycine max as provided by NCBI (assembly Glycine_max_v4.0, assembly accession GCF_000004515.5) and stored in Biostrings objects.

package bioconductor-bsgenome.gmax.ncbi.gmv40

(downloads) docker_bioconductor-bsgenome.gmax.ncbi.gmv40



depends bioconductor-bsgenome:


depends bioconductor-data-packages:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-bsgenome.gmax.ncbi.gmv40

and update with::

   mamba update bioconductor-bsgenome.gmax.ncbi.gmv40

To create a new environment, run:

mamba create --name myenvname bioconductor-bsgenome.gmax.ncbi.gmv40

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-bsgenome.gmax.ncbi.gmv40/tags`_ for valid values for ``<tag>``)

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