recipe bioconductor-bsgenome.hsapiens.ncbi.t2t.chm13v2.0

T2T-CHM13v2.0 assembly (Homo sapiens) wrapped in a BSgenome object

Homepage:

https://bioconductor.org/packages/3.18/data/annotation/html/BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0.html

License:

Artistic-2.0

Recipe:

/bioconductor-bsgenome.hsapiens.ncbi.t2t.chm13v2.0/meta.yaml

The T2T-CHM13v2.0 assembly (accession GCA_009914755.4), as submitted to NCBI by the T2T Consortium, and wrapped in a BSgenome object. Companion paper: "The complete sequence of a human genome" by Nurk S, Koren S, Rhie A, Rautiainen M, et al. Science, 2022.

package bioconductor-bsgenome.hsapiens.ncbi.t2t.chm13v2.0

(downloads) docker_bioconductor-bsgenome.hsapiens.ncbi.t2t.chm13v2.0

versions:

1.5.0-2,  1.5.0-1,  1.5.0-0

depends bioconductor-bsgenome:

>=1.70.0,<1.71.0

depends bioconductor-data-packages:

>=20231203

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-bsgenome.hsapiens.ncbi.t2t.chm13v2.0

and update with::

   mamba update bioconductor-bsgenome.hsapiens.ncbi.t2t.chm13v2.0

To create a new environment, run:

mamba create --name myenvname bioconductor-bsgenome.hsapiens.ncbi.t2t.chm13v2.0

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-bsgenome.hsapiens.ncbi.t2t.chm13v2.0:<tag>

(see `bioconductor-bsgenome.hsapiens.ncbi.t2t.chm13v2.0/tags`_ for valid values for ``<tag>``)

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