-
recipe
bioconductor-bsgenome.hsapiens.ucsc.hg17.masked
Full masked genome sequences for Homo sapiens (UCSC version hg17)
- Homepage
https://bioconductor.org/packages/3.12/data/annotation/html/BSgenome.Hsapiens.UCSC.hg17.masked.html
- License
Artistic-2.0
- Recipe
Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg17, May 2004) and stored in Biostrings objects. The sequences are the same as in BSgenome.Hsapiens.UCSC.hg17, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.
-
package
bioconductor-bsgenome.hsapiens.ucsc.hg17.masked
¶ -
- Versions
1.3.99-5
,1.3.99-4
,1.3.99-3
,1.3.99-2
,1.3.99-0
- Depends
bioconductor-bsgenome
>=1.58.0,<1.59.0
bioconductor-bsgenome.hsapiens.ucsc.hg17
>=1.3.0,<1.4.0
curl
>=7.71.1,<8.0a0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-bsgenome.hsapiens.ucsc.hg17.masked
and update with:
conda update bioconductor-bsgenome.hsapiens.ucsc.hg17.masked
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-bsgenome.hsapiens.ucsc.hg17.masked:<tag>
(see bioconductor-bsgenome.hsapiens.ucsc.hg17.masked/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg17.masked/README.html)