recipe bioconductor-bsgenome.hsapiens.ucsc.hg19

Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)

Homepage:

https://bioconductor.org/packages/3.16/data/annotation/html/BSgenome.Hsapiens.UCSC.hg19.html

License:

Artistic-2.0

Recipe:

/bioconductor-bsgenome.hsapiens.ucsc.hg19/meta.yaml

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg19, based on GRCh37.p13) and stored in Biostrings objects.

package bioconductor-bsgenome.hsapiens.ucsc.hg19

Versions:

1.4.3-6,  1.4.3-5,  1.4.3-4,  1.4.3-3,  1.4.3-2,  1.4.3-1,  1.4.3-0,  1.4.0-8,  1.4.0-7, 

1.4.3-6,  1.4.3-5,  1.4.3-4,  1.4.3-3,  1.4.3-2,  1.4.3-1,  1.4.3-0,  1.4.0-8,  1.4.0-7,  1.4.0-5,  1.4.0-4,  1.4.0-2,  1.4.0-1,  1.4.0-0

Depends:

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-data-packages >=20221102

• curl

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-traser

• bioconductor-katdetectr

• r-ichorcna

• bioconductor-trena

• bioconductor-decomptumor2sig

• bioconductor-madseq

• r-deconstructsigs

• bioconductor-yapsa

• bioconductor-appreci8r

• stream_atac

• bioconductor-codex

• bioconductor-bsgenome.hsapiens.ucsc.hg19.masked

• bioconductor-chipcomp

• bioconductor-uncoverapplib

• bioconductor-rcas

• bioconductor-hilda

• bioconductor-musicatk

• bioconductor-ataccogaps

• bioconductor-circrnaprofiler

• bioconductor-scope

• bioconductor-brainflowprobes

• bioconductor-rarevariantvis

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-bsgenome.hsapiens.ucsc.hg19

and update with:

conda update bioconductor-bsgenome.hsapiens.ucsc.hg19

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bsgenome.hsapiens.ucsc.hg19:<tag>

(see bioconductor-bsgenome.hsapiens.ucsc.hg19/tags for valid values for <tag>)

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