recipe bioconductor-bsgenome.hsapiens.ucsc.hg19

Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)

Homepage

https://bioconductor.org/packages/3.13/data/annotation/html/BSgenome.Hsapiens.UCSC.hg19.html

License

Artistic-2.0

Recipe

/bioconductor-bsgenome.hsapiens.ucsc.hg19/meta.yaml

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg19, based on GRCh37.p13) and stored in Biostrings objects.

package bioconductor-bsgenome.hsapiens.ucsc.hg19

Versions

1.4.3-3,  1.4.3-2,  1.4.3-1,  1.4.3-0,  1.4.0-8,  1.4.0-7,  1.4.0-5,  1.4.0-4,  1.4.0-2, 

1.4.3-3,  1.4.3-2,  1.4.3-1,  1.4.3-0,  1.4.0-8,  1.4.0-7,  1.4.0-5,  1.4.0-4,  1.4.0-2,  1.4.0-1,  1.4.0-0

Depends

• bioconductor-bsgenome >=1.60.0,<1.61.0

• curl >=7.77.0,<8.0a0

• r-base >=4.1,<4.2.0a0

Required By

• bioconductor-hilda

• bioconductor-decomptumor2sig

• bioconductor-codex

• r-deconstructsigs

• bioconductor-musicatk

• bioconductor-uncoverapplib

• bioconductor-madseq

• bioconductor-scope

• bioconductor-appreci8r

• bioconductor-trena

• bioconductor-rarevariantvis

• bioconductor-brainflowprobes

• bioconductor-yapsa

• stream_atac

• bioconductor-bsgenome.hsapiens.ucsc.hg19.masked

• bioconductor-rcas

• bioconductor-chimera

• bioconductor-traser

• bioconductor-circrnaprofiler

• bioconductor-chipcomp

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bsgenome.hsapiens.ucsc.hg19

and update with:

conda update bioconductor-bsgenome.hsapiens.ucsc.hg19

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bsgenome.hsapiens.ucsc.hg19:<tag>

(see bioconductor-bsgenome.hsapiens.ucsc.hg19/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg19/README.html)