recipe bioconductor-bsgenome.hsapiens.ucsc.hg38

Full genome sequences for Homo sapiens (UCSC version hg38, based on GRCh38.p12)

Homepage

https://bioconductor.org/packages/3.12/data/annotation/html/BSgenome.Hsapiens.UCSC.hg38.html

License

Artistic-2.0

Recipe

/bioconductor-bsgenome.hsapiens.ucsc.hg38/meta.yaml

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg38, based on GRCh38.p12) and stored in Biostrings objects.

package bioconductor-bsgenome.hsapiens.ucsc.hg38

Versions

1.4.3-1,  1.4.3-0,  1.4.1-8,  1.4.1-7,  1.4.1-5,  1.4.1-4,  1.4.1-2,  1.4.1-1,  1.4.1-0

Depends

• bioconductor-bsgenome >=1.58.0,<1.59.0

• curl >=7.71.1,<8.0a0

• r-base >=4.0,<4.1.0a0

Required By

• stream_atac

• bioconductor-bsgenome.hsapiens.ucsc.hg38.masked

• bioconductor-musicatk

• bioconductor-trena

• bioconductor-primirtss

• bioconductor-eventpointer

• bioconductor-branchpointer

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bsgenome.hsapiens.ucsc.hg38

and update with:

conda update bioconductor-bsgenome.hsapiens.ucsc.hg38

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bsgenome.hsapiens.ucsc.hg38:<tag>

(see bioconductor-bsgenome.hsapiens.ucsc.hg38/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-bsgenome.hsapiens.ucsc.hg38/README.html)