recipe bioconductor-bsgenome.hsapiens.ucsc.hs1

Full genomic sequences for UCSC genome hs1 (Homo sapiens)

Homepage:

https://bioconductor.org/packages/3.18/data/annotation/html/BSgenome.Hsapiens.UCSC.hs1.html

License:

Artistic-2.0

Recipe:

/bioconductor-bsgenome.hsapiens.ucsc.hs1/meta.yaml

Full genomic sequences for UCSC genome hs1 (the hs1 genome is based on assembly T2T-CHM13v2.0, with GenBank assembly accession GCA_009914755.4). The sequences are stored in DNAString objects.

package bioconductor-bsgenome.hsapiens.ucsc.hs1

(downloads) docker_bioconductor-bsgenome.hsapiens.ucsc.hs1

versions:

1.4.4-1,  1.4.4-0

depends bioconductor-bsgenome:

>=1.70.0,<1.71.0

depends bioconductor-data-packages:

>=20231203

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-bsgenome.hsapiens.ucsc.hs1

and update with::

   mamba update bioconductor-bsgenome.hsapiens.ucsc.hs1

To create a new environment, run:

mamba create --name myenvname bioconductor-bsgenome.hsapiens.ucsc.hs1

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-bsgenome.hsapiens.ucsc.hs1:<tag>

(see `bioconductor-bsgenome.hsapiens.ucsc.hs1/tags`_ for valid values for ``<tag>``)

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