- recipe bioconductor-bsgenome.mmulatta.ucsc.rhemac2
Full genome sequences for Macaca mulatta (UCSC version rheMac2)
- Homepage:
https://bioconductor.org/packages/3.18/data/annotation/html/BSgenome.Mmulatta.UCSC.rheMac2.html
- License:
Artistic-2.0
- Recipe:
Full genome sequences for Macaca mulatta (Rhesus) as provided by UCSC (rheMac2, Jan. 2006) and stored in Biostrings objects.
- package bioconductor-bsgenome.mmulatta.ucsc.rhemac2¶
- versions:
1.4.0-12
,1.4.0-11
,1.4.0-10
,1.4.0-9
,1.4.0-8
,1.4.0-7
,1.4.0-6
,1.4.0-5
,1.4.0-4
,1.4.0-12
,1.4.0-11
,1.4.0-10
,1.4.0-9
,1.4.0-8
,1.4.0-7
,1.4.0-6
,1.4.0-5
,1.4.0-4
,1.4.0-3
,1.4.0-2
,1.4.0-0
- depends bioconductor-bsgenome:
>=1.70.0,<1.71.0
- depends bioconductor-data-packages:
>=20231203
- depends curl:
- depends r-base:
>=4.3,<4.4.0a0
- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install bioconductor-bsgenome.mmulatta.ucsc.rhemac2 and update with:: mamba update bioconductor-bsgenome.mmulatta.ucsc.rhemac2
To create a new environment, run:
mamba create --name myenvname bioconductor-bsgenome.mmulatta.ucsc.rhemac2
with
myenvname
being a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/bioconductor-bsgenome.mmulatta.ucsc.rhemac2:<tag> (see `bioconductor-bsgenome.mmulatta.ucsc.rhemac2/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
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