recipe bioconductor-bsgenome.mmusculus.ucsc.mm10

Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6)

Homepage:

https://bioconductor.org/packages/3.16/data/annotation/html/BSgenome.Mmusculus.UCSC.mm10.html

License:

Artistic-2.0

Recipe:

/bioconductor-bsgenome.mmusculus.ucsc.mm10/meta.yaml

Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm10, based on GRCm38.p6) and stored in Biostrings objects.

package bioconductor-bsgenome.mmusculus.ucsc.mm10

Versions:

1.4.3-2,  1.4.3-1,  1.4.3-0,  1.4.0-12,  1.4.0-11,  1.4.0-10,  1.4.0-9,  1.4.0-8,  1.4.0-7, 

1.4.3-2,  1.4.3-1,  1.4.3-0,  1.4.0-12,  1.4.0-11,  1.4.0-10,  1.4.0-9,  1.4.0-8,  1.4.0-7,  1.4.0-5,  1.4.0-4,  1.4.0-2,  1.4.0-1,  1.4.0-0

Depends:

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-data-packages >=20221102

• curl

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-genestructuretools

• bioconductor-ataccogaps

• stream_atac

• bioconductor-trena

• bioconductor-musicatk

• bioconductor-bsgenome.mmusculus.ucsc.mm10.masked

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-bsgenome.mmusculus.ucsc.mm10

and update with:

conda update bioconductor-bsgenome.mmusculus.ucsc.mm10

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bsgenome.mmusculus.ucsc.mm10:<tag>

(see bioconductor-bsgenome.mmusculus.ucsc.mm10/tags for valid values for <tag>)

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