recipe bioconductor-bsgenome.mmusculus.ucsc.mm10

Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6)

Homepage

https://bioconductor.org/packages/3.14/data/annotation/html/BSgenome.Mmusculus.UCSC.mm10.html

License

Artistic-2.0

Recipe

/bioconductor-bsgenome.mmusculus.ucsc.mm10/meta.yaml

Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm10, based on GRCm38.p6) and stored in Biostrings objects.

package bioconductor-bsgenome.mmusculus.ucsc.mm10

Versions

1.4.3-0,  1.4.0-12,  1.4.0-11,  1.4.0-10,  1.4.0-9,  1.4.0-8,  1.4.0-7,  1.4.0-5,  1.4.0-4, 

1.4.3-0,  1.4.0-12,  1.4.0-11,  1.4.0-10,  1.4.0-9,  1.4.0-8,  1.4.0-7,  1.4.0-5,  1.4.0-4,  1.4.0-2,  1.4.0-1,  1.4.0-0

Depends

• bioconductor-bsgenome >=1.62.0,<1.63.0

• curl >=7.79.1,<8.0a0

• r-base >=4.1,<4.2.0a0

Required By

• stream_atac

• bioconductor-musicatk

• bioconductor-genestructuretools

• bioconductor-bsgenome.mmusculus.ucsc.mm10.masked

• bioconductor-trena

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bsgenome.mmusculus.ucsc.mm10

and update with:

conda update bioconductor-bsgenome.mmusculus.ucsc.mm10

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bsgenome.mmusculus.ucsc.mm10:<tag>

(see bioconductor-bsgenome.mmusculus.ucsc.mm10/tags for valid values for <tag>)

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