recipe bioconductor-bsgenome.mmusculus.ucsc.mm39

Full genome sequences for Mus musculus (UCSC genome mm39, based on GRCm39)

Homepage:

https://bioconductor.org/packages/3.18/data/annotation/html/BSgenome.Mmusculus.UCSC.mm39.html

License:

Artistic-2.0

Recipe:

/bioconductor-bsgenome.mmusculus.ucsc.mm39/meta.yaml

Full genome sequences for Mus musculus (Mouse) as provided by UCSC (genome mm39, based on assembly GRCm39) and stored in Biostrings objects.

package bioconductor-bsgenome.mmusculus.ucsc.mm39

(downloads) docker_bioconductor-bsgenome.mmusculus.ucsc.mm39

versions:

1.4.3-4,  1.4.3-3,  1.4.3-2,  1.4.3-1,  1.4.3-0

depends bioconductor-bsgenome:

>=1.70.0,<1.71.0

depends bioconductor-data-packages:

>=20231203

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-bsgenome.mmusculus.ucsc.mm39

and update with::

   mamba update bioconductor-bsgenome.mmusculus.ucsc.mm39

To create a new environment, run:

mamba create --name myenvname bioconductor-bsgenome.mmusculus.ucsc.mm39

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-bsgenome.mmusculus.ucsc.mm39:<tag>

(see `bioconductor-bsgenome.mmusculus.ucsc.mm39/tags`_ for valid values for ``<tag>``)

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